Revision as of 08:03, 12 April 2018

The Modules package provides for the dynamic modification of a user's environment without modifying the .bashrc or .profile files. The user simply loads the needed packages and the module command aloters or sets shell environment variables like the PATH variable.

Example Commands

module avail ->lists available modules on the system

module listing ->lists the modules a user currently has loaded

module load namd ->load the NAMD package

module show namd ->display information aboute the NAMD module

man module ->complete documentation on module

Current Modules on HPC

blast+

cuda/8.0

GATK

gcc/5.4.0 gcc/6.3.0

hmmer

java

lammps/20161117

matlab

mpich/gnu/3.2

mpich2/gnu/1.5

mvapich2/gnu/2.2

mothur/1.39.5 mothur/1.39.5_mpi

openmpi/gnu/2.0

namd

python/2.6.5 python/3.6.4

R/3.3.3  : R/3.4.3

vmd

Admin Note

Module files are located in /opt/scyld/modulefiles